PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015883m
Common NameCARUB_v10015883mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 472aa    MW: 53843.9 Da    PI: 7.5791
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015883mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix957e-3090176187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Carubv10015883m  90 RWPRQETLMLLEVRSRLDHKFKESNQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 176
                      8*************************************999*****************************98.77888********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.8E-487150IPR001005SANT/Myb domain
PROSITE profilePS500907.09789148IPR017877Myb-like domain
PfamPF138376.9E-2090177No hitNo description
CDDcd122036.73E-1990155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEDHHHQNHQ VQYGIAQPSL HFSSDLFGFN LVSAPDQHHR PHLTDHEISF LPRGIQGLTV  60
AGNNSNSIVA STSCARGGFS GFTDGGGTGR WPRQETLMLL EVRSRLDHKF KESNQKGPLW  120
DEVSRIMSEE HGYTRSGKKC REKFENLYKY YKKTKEGKAG RRQDGKNYRF FRQLEAIYGE  180
SKDSVSCYDN SQFIMTNALH SFHAPNIHHN AVSHIHQNPL SNNTQSLSIS NNLNSSSELD  240
ISSSSEGNVS TRSEGMNWKA KIKEFIGIHI ERLIEKQDFW LEKLVKTVED KEHQRMVKEE  300
EWKRVEAARI EKERSLWTKE RERMEARDVA VIEALQYLTG KALIRPNSSS PTERINGNIS  360
DQTMADEENK SKMEKKIMSK KRKEKWSSHG GNQLRIKENT MMIYDNQEDP SCDVEQGHHE  420
GYSPSNSKEG NPSCGIAMAA STNCFPMLVG DGDQNSWEGY GLKLRKEDNH Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299692.10.0hypothetical protein CARUB_v10015883mg
SwissprotQ9LZS01e-133PTL_ARATH; Trihelix transcription factor PTL
TrEMBLR0I3S20.0R0I3S2_9BRAS; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_30009010.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27672871
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10000.10.0Trihelix family protein